I presume your original gravity reading has been temperature adjusted? Use the Hydrometer Adjust tool in the left task bar.
Apart from that, if your pre-boil SG is 1.043, you will boil off a certain volume, and concentrate your wort to a higher SG. Thus: say 31 litres pre-boil at 1.043, allow 6 litres evaporation, leaving 25 litres at 1.053 !
BeerSmith calculates this for you, based on your equipment and settings you have entered.
If you go to your recipe, click on the box "Details" in the line where it says Equipment. You can then enter the details of your desired settings.
Alternatively, if you click the box which says "Choose", and then click "New" at the bottom of the pop up box, you can design a totally new entry based on your specific equipment, give it a name, and then choose it for your recipe. You might need to edit it a few times, until it predicts results in line with your actual outcomes.
The BeerSmith Help Page may be useful as well. Click on the Arrow/Question mark logo in the task bar, then click on any field you are not sure of, and the Help Page will open.
BeerSmith OG and FG figures are only a prediction, based on your selected Brewhouse Efficiency %, the malt bill, the avarage attenuation for the yeast you have entered, and your equipment settings. My actual results are never exactly as predicted by BeerSmith, although I get close.
Hope you can figure it out. I find BeerSmith a really useful tool, but it did take me a while to get my head around all the functions it has.
There is a post, if I recall correctly, about setting up BeerSmith, as it does have some foibles which need to be understood and allowed for.
Edit: Found it, here's the link:
viewtopic.php?f=13&t=9007